The jobs created with mk-job are stored not in the site but in the agent of the host.

How to find the right directory:

> dpkg -l | grep check
> dpkg -L check-mk-agent
> cd /var/lib/check_mk_agent/job << thats the directory
> rm <job_name>

Always exercise caution when performing such actions and make sure to have backups in place before making changes to your system.

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